An Introductory Guide to Two and Three

Welcome to the fascinating world of Nuclear Magnetic Resonance (NMR) spectroscopy! If you love science and technology, and are curious about how things work at a most fundamental level, then NMR spectroscopy is a field that will surely captivate your imagination.

NMR is a powerful analytical technique that is used widely in chemistry, physics, biology, and medicine (just to name a few fields) for understanding the properties and behavior of atoms and molecules. It provides a unique window into the microscopic world of atomic nuclei and their interaction with magnetic fields. With NMR spectroscopy, we can determine the structures of molecules with amazing accuracy, measure their dynamic properties, and even observe chemical reactions in real time.

The fundamental principle underlying NMR is the magnetic spin of protons, neutrons, and other atomic nuclei. If you remember your high school physics, you’ll know that a spinning charged particle generates a magnetic field. In the case of atomic nuclei, this magnetic field is generated by the spinning of positively charged protons, each of which is like a tiny magnet aligned along a specific axis.

When an external magnetic field is applied to a collection of nuclei, these tiny magnets align either parallel or anti-parallel to the field lines. At equilibrium, there is a slight excess of nuclei aligned along the direction of the magnetic field. However, the energy levels of these nuclei are slightly different due to their alignment, leading to a transition from one energy state to another when a specific frequency of electromagnetic radiation is absorbed. This frequency is called the resonant frequency, and it depends on the strength of the magnetic field, the type of nucleus, and the local chemical environment.

The detection of this resonant frequency is the basis of NMR spectroscopy. By measuring the frequency and intensity of the signals emitted by nuclei as they relax back to their original state, we can learn a great deal about the structure and dynamics of molecules. NMR has been used to study everything from small organic compounds to large biological macromolecules, and has even been used to investigate the structure of DNA and the metabolism of the human brain!

Basics of NMR

Now that you have a basic understanding of the principles of nuclear magnetic resonance (NMR) spectroscopy, let’s dive deeper into the foundational concepts that make this technique so powerful and versatile.

One of the most important concepts in NMR spectroscopy is the chemical shift. Chemical shift refers to the difference in the resonant frequency of a nucleus relative to a standard molecule, typically tetramethylsilane (TMS). This difference is caused by the electron distribution around the nucleus, which is influenced by the chemical environment.

The chemical shift is measured in parts per million (ppm) and can be visualized as a scale on the NMR spectrum. The chemical shift scale allows us to identify the type and number of different nuclei in a molecule, as well as their chemical environment. Different chemical groups give rise to characteristic chemical shift values, allowing us to identify and assign signals in the spectrum.

Another important concept in NMR spectroscopy is spin-spin coupling, also known as J coupling. J coupling arises due to the interaction of the magnetic dipole moments of two adjacent nuclei, which can influence the local magnetic field experienced by each nucleus. This results in the splitting of NMR signals into multiple peaks.

The pattern and intensity of spin-spin coupling in a molecule can provide a wealth of information about its structure, such as the connectivity of atoms, distances between atoms, and the stereochemistry of chiral centers. By analyzing the coupling constants or J values between nuclei, we can determine the connectivity and distances between atoms in a molecule.

NMR spectroscopy also allows us to measure the relaxation times of nuclei, which can provide information about the dynamics and motion of molecules. The two main relaxation times are T1, which is the time it takes for the nucleus to realign with the external magnetic field, and T2, which is the time it takes for the magnetic moments of adjacent nuclei to become incoherent with each other.

Two-Dimensional (2D) NMR

Two-dimensional (2D) NMR spectroscopy is a technique that uses two magnetic fields to produce a 2D spectrum, providing more detailed information about molecules than traditional one-dimensional (1D) NMR spectroscopy. 2D NMR spectroscopy has revolutionized the field of NMR and has become a fundamental tool in modern chemistry and biochemistry.

One of the most common 2D NMR techniques is the correlation spectroscopy (COSY) experiment, which provides information about the connectivity of hydrogen atoms in a molecule. COSY works by detecting the correlations between the resonances of two nuclei, such as hydrogen atoms, that are bonded to adjacent carbon atoms. By correlating these resonances, we can obtain a two-dimensional COSY spectrum that shows a cross-peak at the intersection of the corresponding resonances. The position of this cross-peak indicates the number of bonds connecting the hydrogens, providing us with valuable structural information about the molecule.

Another important 2D NMR technique is total correlation spectroscopy (TOCSY), which helps to identify spin systems within a molecule and elucidate the connectivity of the nuclei within these systems. TOCSY works by transferring magnetization from one spin to the next through spin coupling interactions, resulting in a cross-peak that connects all nuclei within a spin system. This allows us to establish the connectivity between all the nuclei in the system and determine the sequence of links between these nuclei.

The nuclear Overhauser effect spectroscopy (NOESY) experiment, which is another form of 2D NMR, is used to observe the through-space interactions between protons. NOESY relies on the Nuclear Overhauser Effect (NOE) that occurs when two protons are close in space, that is, they are within about 4 Å of each other. The cross-peaks observed in NOESY spectra can provide information about the 3D structure of a molecule or biomolecule.

Other important 2D NMR techniques used in chemistry and biochemistry include the heteronuclear single quantum coherence (HSQC) and the heteronuclear multiple bond correlation (HMBC) experiments. HSQC can be used to identify and assign carbon atoms in a molecule and determine the type of hydrogen atoms that are directly bonded to them. HMBC is used to determine connectivity between nuclei separated by multiple bonds.

Three-Dimensional (3D) NMR

Three-dimensional (3D) NMR spectroscopy builds upon the concepts of 2D NMR, providing even more detailed information about molecules and biological systems. It has become an indispensable tool in structural biology and is used to study large macromolecular systems, such as proteins, nucleic acids, and carbohydrates.

One of the biggest advantages of 3D NMR spectroscopy is that it allows the observation of correlations between three nuclei at a time, instead of just two, as in 2D NMR. The additional dimension provides more information about the molecule’s structure and goes beyond the two-dimensional projection of the molecule.

One of the commonly used 3D NMR techniques in structural biology is the heteronuclear single quantum coherence (HSQC) experiment. HSQC can provide detailed information about the structural changes that occur when a protein, for example, binds to a ligand. The HSQC experiment identifies the resonance frequencies of the carbon and nitrogen nuclei in the protein, which enables us to locate where the nuclei are in the protein.

Another important 3D NMR technique is NOESY-HSQC experiment, which combines the NOESY and HSQC experiments to study the architecture of protein-protein complexes. The NOESY-HSQC experiment provides detailed insights into the atomic-scale interactions that occur between a protein and its binding partner, such as a ligand or another protein. It is an essential tool for structure-based drug design, and can be used to develop new drugs to target specific biological processes.

In addition, 3D NMR is also used to study the dynamics of biomolecules in solution. For example, exchanging spectroscopy (EXSY) is used to investigate the kinetics of slow processes, which cannot be observed in conventional 1D or 2D NMR experiments. By monitoring the spectral changes over time, EXSY can help identify the microscopic steps in a chemical reaction or a biological process.

Despite its numerous advantages, 3D NMR spectroscopy can be challenging due to the increased complexity and time required to acquire high-quality data. Advanced techniques, such as cryogenic probe technology, pulse field gradient (PFG) methods, and multidimensional Fourier transform processing methods, have been developed to overcome these challenges and provide the high sensitivity and resolution required to study large systems.


As we conclude this introductory guide to nuclear magnetic resonance (NMR) spectroscopy, we hope that you have gained a deeper appreciation for the power and versatility of this analytical tool. NMR spectroscopy has greatly impacted various fields of science, such as chemistry, biochemistry, physics, material science, and medicine.

One of the most significant advantages of NMR spectroscopy is its non-destructive nature, meaning we can analyze the same sample repeatedly without causing any damage. The ability to analyze a variety of molecules in their native environment, without the need for complex sample preparation, has revolutionized the study of biomolecules and helped advance many areas of biomedical research. NMR spectroscopy is an irreplaceable means to gain critical structural, mechanistic, and dynamic information about the underlying processes in complex macromolecules.

Moreover, NMR spectroscopy offers an extraordinary resolution at the atomic level, allowing for detailed analysis of complex biological molecules. The ability to look inside biomolecules and understand the patterns of their dynamics, interactions, and stability is a very powerful and highly valued approach. It is also used to elucidate the architectures of molecular assemblies and to complement the insights provided by other spectroscopic and computational methods.

Finally, as the field of NMR continues to evolve, there is a growing demand for new methods that can provide more detailed information about biological systems at the molecular level. New NMR regimes, such as dynamic nuclear polarization (DNP) NMR, in-cell, and in situ NMR, are opening up new avenues of research that were previously not possible. Moreover, advancements in computational techniques and theoretical frameworks are developing and allowing the full exploitation of the experimental potentials. Advancements in hardware and software are making NMR more accessible, and significant progress is being made towards the automation of certain routine aspects of NMR data acquisition.

Leave a Comment

Your email address will not be published. Required fields are marked *